Systems biology
Vogel C, Marcotte EM (2012) Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat Rev Genet, 13:227-32 (2012) PubMed
Lee I, Seo Y-S, Coltrane D, Hwang S, Oha T, Marcotte EM, Ronald PC (2011) Genetic dissection of the biotic stress response using a genome-scale gene network for rice. Proc Natl Acad Sci USA, 108(45):18548-53. PubMed
Han K, Lou DI, Sawyer SL (2011) Identification of a genomic reservoir for new TRIM genes in primate genomes. PLoS Genetics, 7(12): e1002388. PubMed pdf
McGary KL, Park TJ, Woods JO, Cha HJ, Wallingford JB, Marcotte EM (2010) Systematic discovery of nonobvious human disease models through orthologous phenotypes. Proc Natl Acad Sci U S A, 107(14):6544-9. PubMed / Nature News / The Scientist(blog) / NY Times / Genome Biology
Synthetic biology
Hughes RA, Miklos AE, Ellington AD (2011) Gene synthesis: methods and applications. Methods Enzymol 498:277-309. PubMed
Hughes RA, Ellington AD (2010) Rational design of an orthogonal tryptophanyl nonsense suppressor tRNA. Nucleic Acids Res 38(19):6813-30. PubMed
Tabor JJ, Salis HM, Simpson ZB, Chevalier AA, Levskaya A, Marcotte EM, Voigt CA, Ellington AD (2009) A synthetic genetic edge detection program. Cell 137:1272-81. PubMed
Levy M, Ellington AD (2008) Directed Evolution of Streptavidin Variants Using IVC. Chem Biol 15:979-89. PubMed
Diagnostics
Li B, Ellington AD, Chen X (2011) Rational, modular adaptation of enzyme-free DNA circuits to multiple detection methods. Nucleic Acids Res 39(16):e110. PubMed